Showing posts with label Instrument. Show all posts
Showing posts with label Instrument. Show all posts

Friday, 22 May 2015

PORTABLE PHOTOSYNTHESIS SYSTEM : MEASUREMENT PRINCIPLE

MEASUREMENT THEORY

The PHOTOSYNTHESIS SYSTEM is a completely self-contained unit for measuring the CO2 assimilation (Photosynthesis and Respiration) and transpiration (water loss by evaporation of leaves of plants. These systems are designed specifically for use by students in Schools and Universities. It offers many of the facilities of instruments designed for research , but greatly simplifies the measurement procedure.
 
It operates on the Open System principle. The leaf is placed in a sealed enclosure with a window for illumination. This is referred to as the leaf cuvette. Through the cuvette is passed a measured flow of air. The CO2 / H2O concentrations of the air entering (reference air) and of the air leaving (analysis air) are measured. To measure the concentrations the PHOTOSYNTHESIS SYSTEM uses a single CO2 and H2O sensor and alternately switches the reference and analysis air. From the flow rate of air and the change in the concentration the assimilation and transpiration rates are calculated.

Though it is designed to supply ambient air to the cuvette, for the study of CO2 responses, it is possible to decrease the CO2 concentration in a series of steps. A similar provision is made for water vapour responses. It is supplied with a leaf cuvette which can be used for a wide variety of leaves. A light unit will be available shortly (LED) for use with the cuvette for manual control of cuvette light intensity.

CO2 /H2O ANALYSIS MEASUREMENT PRINCIPLE

Carbon Dioxide absorbs Infra-red radiation strongly at a wavelength of 4.26 microns. PHOTOSYNTHESIS SYSTEM uses this absorption to measure the CO2 concentration. The analyzer consists of a source of infra-red radiation (a small tungsten filament lamp) at one end of a highly polished, gold plated tube through which the air passes. At the other end of the tube is the infra-red detector which has a window through which only infra-red radiation at 4.26 microns can pass so that the responds only to the presence of CO2. The theoretical analysis range is from 0-100% CO2. However, because of the absorption characteristics of gases, the absorption path lengths, infrared source intensities, detector sensitivities and the S/N (Signal to Noise) ratio of the system define the effective range. The absorption path length of PHOTOSYNTHESIS SYSTEM is optimised for 2,000 volumes of CO2 per million volumes of air. This is correctly referred to as 2000 parts per million by volume or 2000 ppm. (Ambient air contains about 360 ppm.).
Temperature corrections are not required as the opto-electronics are thermostatted and the air is equilibrated to this temperature before entering the absorption cells. The built in transducer compensates for absolute pressure changes in the cell.
In part, the excellent stability of PHOTOSYNTHESIS SYSTEM is due to regular zeroing when CO2 free, air is passed through (referred to as ZERO). ZERO minimises the effects on span (gas sensitivity), of sample cell contamination, source ageing, and changes in detector sensitivity, amplifier gains, and reference voltages. It is done every approximately minute. The ZERO reading is used to compensate for changes in the signal level. From the relationship between absorptance and concentration, determined in the factory, and the current calibration factor, the sample concentration is determined.

Water vapor is measured using a high precision capacitive sensor. This consists of a small piece of glass coated first with a layer of metal, then with a polymer, followed by a second metal layer. Wires are soldered to the metal layers and the sensor is placed in a circuit that measures its electrical capacitance. The amount of water in the polymer depends on the water vapour content of the air and the electrical capacitance of the polymer depends on the water content. So with calibration, the water in the air can be measured. Water vapour concentration is again expressed as a volume/volume relationship but in parts per thousand, which is called millibars (mb)

Both CO2 and H2O measurements give the absolute concentrations for the reference air, and then the difference between the reference and the analysis concentration.
The complete PHOTOSYNTHESIS SYSTEM gas circuit with control valves is shown below.





Friday, 6 December 2013

COMPARISON BETWEEN ED-XRF AND WD-XRF

We have discussed about  ED-XRF & WD-XRF in the earlier posts . Now I would like to highlight the major differences between the two X-ray techniques . The most important point of comparison are listed below ::

1. RESOLUTION :

It describes the width of the spectra peaks. The lower the resolution number the more easily an elemental line is distinguished from the nearby X-ray line intensities.

a) The resolution of the WD-XRF system is dependent on the crystal and optics design,particularly collimation, spacing and positional reproducibility. The effective resolution of a WD-XRF system may vary from 20 eV in an inexpensive bench top to 5 eV or less in a laboratory instrument. The resolution is not detector dependant.

Advantage of WD-XRF: High resolution means fewer spectral overlaps and lower
background intensities

b)  The resolution of ED-XRF system is dependent on the resolution of the detector. This can vary from 150 V or less for a liquid nitrogen cooled Si(Li) detector, 150 – 220 eV for various solid state detectors, or 600 eV or more for gas filled proportional counter.

Advantage of ED-WRF: WD-XRF crystal and optics are expensive, and are one more failure mode.

2. SPECTRAL OVERLAPS:

Spectral deconvolutions are necessary for determining net intensities when two spectral lines overlap because the resolution is too high for them to be measured independently.

a) With a WD-XRF instrument with very high resolution (low number of eV) spectral
overlap corrections are not required for a vast majority of elements and applications.
The gross intensities for each element can be determined in a single acquisition.

Advantage WD-XRF: Spectral deconvolutions routines introduce error due to counting statistics for every overlap correction onto every other element being corrected for. This can double or triple the error

b) The ED-XRF analyzer is designed to detect a group of elements all at once. The some type of deconvolutions method must b used to correct for spectral overlaps. Overlaps are less of a problem with 150 eV resolution systems, but are significant when compared to WD-XRF. Spectral overlaps become more problematic at lower resolutions.

3. BACKGROUND

The background radiation is one limiting factor for determining detection limits, repeatability, and reproducibility.

a) Since a WD-XRF instrument usually uses direct radiation flux the background in the region of interest is directly related to the amount of continuum radiation within the region of interest the width is determined by the resolution.

b) The ED-XRF instrument uses filters and/or targets to reduce the amount of continuum radiation in the region of interest which is also resolution dependant, while producing a higher intensity X-ray peak to excite the element of interest.
Even, WD-XRF has the advantage due to the resolution. If a peak is one tenth as wide it has one tenth the background. ED-XRF counters with filters and targets that can reduce the background intensities by a factor of ten or more.

4. EXCITATION EFFICIENCY:

Usually expressed in PPM per count-per-second (cps) or similar units, this is the other main factor for determining detection limits, repeatability, and reproducibility. The relative excitation efficiency is improved by having more source x-rays closer to but above the absorption edge energy for the element of interest.

a. WDXRF generally uses direct unaltered x-ray excitation, which contains a continuum of energies with most of them not optimal for exciting the element of interest.

b. EDXRF analyzers may use filter to reduce the continuum energies at the elemental
lines, and effectively increasing the percentage of X-rays above the element absorption edge. Filters may also be used to give a filter fluorescence line immediately above the absorption edge, to further improve excitation efficiency. Secondary targets provide an almost monochromatic line source that can be optimized for the element of interest to achieve optimal excitation efficiency.

Sunday, 1 December 2013

ENERGY DISPERSIVE X-RAY FLUORESCENCE (ED-XRF)

INTRODUCTION

In Energy Dispersive X-Ray Fluorescence spectrometry (ED-XRF), the identification of characteristic lines is performed using detectors that directly measure the energy of the photons. In energy dispersive X-ray fluorescence analysis (EDXRF), a solid-state detector is used to count the photons, simultaneously sorting them according to energy and storing the result in a multichannel memory. The result is an X-ray energy vs. intensity spectrum. The range of detectable elements ranges from Be (Z = 4) for the light elements and goes up to U (Z = 92) on the high atomic number Z side. In principle, XRF analysis is a multielement analytical technique and in particular, the simultaneous determination of all the detectable elements present in the sample is inherently possible with EDXRF. In WDXRF both the sequential and the simultaneous detection modes are possible. Although energy dispersive detectors generally exhibit poorer energy resolution than wavelength dispersive analyzers, they are capable of detecting simultaneously a wide range of energies. The most frequently used detector in EDXRF is the silicon semiconductor detector, which nowadays can have excellent energy resolution.

INSTRUMNTATION

An ED-XRF system consists of several basic functional components, as shown in
Figure The major components are as follows :
  1. X- Ray excitation source
  2. Sample Chamber
  3. Si (Li) detector
  4. Preamplifier
  5. Main Amplifier
  6. Multichannel Pulse Height Analyzer

The properties and performances of an EDXRF system differ upon the electronics and the enhancements from the computer software.   
Typical ED-XRF detection arrangement.



We will discuss in detail for every component :

1. Excitation Mode

A) Direct Tube Excitation .

Because of the simplicity of the instrument and the availability of a high photon output flux by using direct tube excitation, the X-ray fluorescence spectrometer equipped with an Xray tube as direct excitation source is gaining more and more attention from manufactures. The spectrometer is more compact and cheaper compared to secondary target systems. Of course, the drawback is still the less flexible selection of excitation energy. However, by using an appropriate filter between tube and sample, one can obtain an optimal excitation.

The most popular X-ray tube used in direct excitation ED spectrometer is the side window tube for reasons of simplicity and safety. With direct tube excitation, low powered X-ray tubes (< 100 W) can be used. These air cooled tubes are very compact, less expensive, and only require compact, light, inexpensive, highly regulated solid state power supplies. In a WD spectrometer, on the other hand, high-power tubes (3-4 kW) are essential to compensate for the losses in the crystal and collimator. With the low-power tubes used in ED spectrometer, better excitation of light elements (i.e. low-Z element), analysis of smaller samples, small spot analysis, and compact systems can be obtained.

B) Secondary Target Excitation.

The principle of secondary target excitation was developed to avoid the intense
Bremsstrahlung continuum from the X-ray tube by using a target between tube and sample. 

Schematic illustration of secondary target excitation


The ratio of the intensity of the characteristic lines to that the continuum in secondary target excitation is much higher than that in direct tube excitation because the continuum part of the excitation spectrum of the secondary target is generated only by scattering. One can excite various elements efficiently by selecting a secondary target that has characteristic lines just above the absorption edges of the elements of interest in the sample. Therefore, secondary target excitation has some obvious advantages over direct tube excitation: its flexibility for getting an optimized and near monochromatic excitation providing a better selectivity and an improved sensitivity. However, to compensate for the intensity losses that occur at the secondary scatterer, a high-powered tube as used in WD spectrometers is required; making the whole system more sophisticated and expensive compared to direct tube excitation setups.

C) Radio Isotopic Excitation.

A variety of about 30 commercially available radio-isotopic materials can be chosen for an optimal excitation. The X-rays and/or γ-rays emitted from these radio-isotopic sources cover a wide range (10 – 60 keV) of excitation energies. With a high energy source like 241 Am, K lines instead L lines can be used for quantification in the case of analyzing high-Z rare earth elements, with considerably less matrix effects and spectrum overlaps. Sometimes the same idea as in the secondary target excitation is used to avoid non-photon radiation. A proper design of excitation-detection geometry can improve greatly the sensitivity and accuracy of the XRF analysis with such excitation source. The disadvantages of using radioisotopic sources however lie in their low photon output, intensity decay and storage problems.



2. Detectors

Energy dispersive X-ray spectrometry is based upon the ability of the detector to create signals proportional to the X-ray photon energy, therefore, mechanical devices, such as analyzing crystals, are not required as in wdxrf . Several types of detectors have been employed, including silicon, germanium and mercuric iodide .

Cross section of an Si(Li) detector crystal with p-i-n structure and the
production of electron-hole pair.

The solid state, lithium-drifted silicon detector, Si(Li), was developed and applied to Xray detection in the 1960’s. Early 1970’s, this detector was firmly established in the field of X-ray spectrometry, and was applied as an X-ray detection system for scanning Electron Microscopy (SEM) as well as X-ray spectrometry. The principal advantage of the Si(Li) detector is its excellent resolution.

Si(Li) detector can be considered as a layered structure in which a lithium-drifted active region separates a p-type entry side from an 
n-type side. Under reversed bias of approximately 600 V, the active region acts as an insulator with an electric field gradient throughout its volume. When an X-ray photon enters the active region of the detector, photoionization occurs with an electron-hole pair created for each 3.8 eV of photon energy. Ideally, the detector should completely collect the charge created by each photon entry, and result in a response for only that energy. In reality, some background counts appear because of the energy loss in the detector. Although these are kept to a minimum by engineering, incomplete charge collection in the detector is a contributor to background counts. In the X-ray spectrometric, important region of 1 – 20 keV, silicon detectors have excellent efficiency for conversion of X-ray photon energy into charge. Some of the photon energy may be lost by photoelectric absorption of the incident X-ray, creating an excited Si atom which relaxes to yield an Si Kα X-ray. This X-ray may escape from the detector, resulting in an energy loss equivalent to the photon energy; in the case of Si Kα, this is 1.74 keV. Therefore, an escape peak 1.74 keV lower than the true photon energy of the detected X-ray may be observed for intense peaks. For Si(Li) detectors, these are usually a few tenths of one percent, and never more than 2%, of the intensity of the main peak.

 The Si(Li) detector schematic
Resolution of an energy dispersive X-ray spectrometer is normally expressed as the Full Width at Half Maximum amplitude (FWHM) of the Mn X-ray at 5.9 keV. The resolution will be somewhat count rate dependent. Commercial spectrometers are supplied routinely with detectors which display approximately 145 eV (FWHM @ 5.9 keV). The resolution of the system is a result of both electronic noise and statistical variations in conversion of the photon energy. Electronic noise is minimized by cooling the detector, and the associated preamplifier with liquid nitrogen (Figure). In many cases, half of the peak width is a result of electronic noise.



3. Pulse Height Analysis

The X-ray spectrum of the sample is obtained by processing the energy distribution of X-ray photons which enter the detector. A single event of one X-ray photon entering the detector causes photoionization and produces a charge proportional to the photon energy. Numerous electrical sequences must take place before this charge can be converted to a data point in the spectrum.

When an X-ray photons enters the Si(Li) detector, it is converted into an electrical charge which is coupled to a Field Effect Transistor (FET). The FET, and the rest of the associated electronics which make up the preamplifier, produce an output proportional to the energy of the X-ray photon. Using a pulsed optical preamplifier, this output is in the form of a step signal. Because photons vary in both energy and number per unit time, the output signal, due to successive photons being emitted by a multielement sample, resembles a staircase with various step heights and time spacing. When the output reaches a predetermined level, the detector and the FET circuitry is reset to its starting level, and the process repeated.

The preamplifier stage integrates each detector charge signal to generate a voltage step proportional to the charge. This is then amplified and shaped in a series of integrating and differentiating stages. Owing to the finite pulse-shaping time, in the range of microseconds, the system will not accept any other incoming signals in the meanwhile (dead time), but extend its measuring time instead. In a further step the height of these signals is digitized as a channel number (analog-to-digital converter, ADC), stored to a memory (multichannel analyzed, MCA) and finally displayed as a spectrum, where the number of counts reflects the respective intensity. In a more modern approach, the output signals of the preamplifier are digitized directly, which can increase the throughput of the system significantly.

4. Energy Resolution

Mn-Kα spectrum and calibrated pulser
The energy resolution of the EDXRF spectrometer determines the ability of a given system to resolve characteristic X-rays from multiple-element samples and is normally defined as the full width at half maximum (FWHM) of the pulse-height distribution measured for a monoenergetic X-ray. A conventional choise of X-ray energy is 5.9 keV, corresponding to the Kα energy of Mn. Figure II.6 shows a typical pulse-height spectrum of Mn-Kα X-rays simultaneously with a calibrated pulser. The purpose of the pulser measurement is to monitor the resolution of the electronic system independent of any peak broadening due to the detector itself. Typical state-of the art detectors Si(Li) and Ge(HP) achieve 130 to 170 eV, but depends strongly on the size of the crystal. The smaller the crystal, the better is the resolution.


Thursday, 16 May 2013

ATOMIC FORCE MICROSCOPY


Atomic force microscopy (AFM) or scanning force microscopy (SFM) is a very high-resolution type of scanning probe microscopy, with demonstrated resolution on the order of fractions of a nanometer, AFM provides a 3D profile of the surface on a nanoscale, by measuring forces between a sharp probe (<10 nm) and surface at very short distance (0.2-10 nm probe-sample separation). The probe is supported on a flexible cantilever. The AFM tip “gently” touches the surface and records the small force between the probe and the surface.
The AFM measures the forces acting between a fine tip and a sample. The tip is attached to the free end of a cantilever, The cantilever is typically silicon or silicon nitride with a tip radius of curvature on the order of nanometres and it is brought very close to a surface. Attractive or repulsive forces resulting from interactions between the tip and the surface will cause a positive or negative bending of the cantilever. The bending is detected by means of a laser beam, which is reflected from the back side of the cantilever. The figure  shows the basic concept of AFM :


What types of forces are measured?

Plot of force as a function of probe-sample separation
The dominant interactions at short probe-sample distances in the AFM are Van der Waals interactions. However long-range interactions (i.e. capillary, electrostatic, magnetic) are significant further away from the surface. These are important in other SPM methods of analysis. During contact with the sample, the probe predominately experiences repulsive Van der Waals forces (contact mode). This leads to the tip deflection described previously. As the tip moves further away from the surface attractive Van der Waals forces are dominant (non-contact mode).


Modes of operation

CONTACT MODE

In the So-called contact-AFM mode, the tip makes soft “physical contact” with the surface of the sample. The deflection of the cantilever Dx is proportional to the force acting on the tip, via Hook’s law, F=-k. x, where k is the spring constant of the cantilever. In contact-mode the tip either scans at a constant small height above the surface or under the conditions of a constant force. In the constant height mode the height of the tip is fixed, whereas in the constant-force mode the deflection of the cantilever is fixed and the motion of the scanner in z-direction is recorded. By using contact-mode AFM, even “atomic resolution” images are obtained. For contact mode AFM imaging, it is necessary to have a cantilever which is soft enough to be deflected by very small forces and has a high enough resonant frequency to not be susceptible to vibration instabilities. Silicon Nitride tips are
used for contact mode. In these tips, there are 4 cantilever with different geometries attached to each substrate, resulting in 4 different spring constants.
Probe with four different cantilevers with different spring constants (N/m
Advantages:
  • High scan speeds
  • Atomic resolution” is possible
  • Easier scanning of rough samples with extreme changes in vertical topography
Disadvantages:
  • Lateral forces can distort the image.
  • Capillary forces from a fluid layer can cause large forces normal to the tip sample interaction
  • Combination of these forces reduces spatial resolution and can cause damage to soft samples.
INTERMITTENT MODE (TAPPING)


The imaging is similar to contact. However, in this mode the cantilever is oscillated at its resonant frequency, Figure 4. The probe lightly “taps” on the sample surface during scanning, contacting the surface at the bottom of its swing. By maintaining a constant oscillation amplitude a constant tip-sample interaction is  maintained and an image of the surface is obtained.

Advantages:

  • Higher lateral resolution (1 nm to 5 nm).
  • Lower forces and less damage to soft samples in air.
  • Almost no lateral forces.
Disadvantage:

  • Slower scan speed than in contact mode.
  
  NON CONTACT MODE

(Attractive VdW) The probe does not contact the sample surface, but oscillates above the adsorbed fluid layer on the surface during scanning. (Note: all samples unless in a controlled UHV or environmental chamber have some liquid adsorbed on the surface). Using a feedback loop to monitor changes in the amplitude due to attractive VdW forces the surface topography can be measured.

Advantage:

  • VERY low force exerted on the sample(10-12 N), extended probe lifetime.
Disadvantages:

  • Lower lateral resolution, limited by tip-sample separation.
  • Contaminant layer on surface can interfere with oscillation; usually need ultra-high vacuum (UHV) to have best imaging.
  • Slower scan speed to avoid contact with fluid layer.
  • Usually only applicable in extremely hydrophobic samples with a minimal fluid layer.


Applications :

The number of applications for AFM has exploded since it was invented in 1986 and Nowadays this technique is involved in many fields of Nanoscience and nanotechnology. The remarkable feature of STM and AFM instruments is their ability to examine samples not only in an ultrahigh vacuum but also on ambient conditions or even in liquids. AFM can image the non-conducting surfaces, and therefore it is very suitable for biological systems.

Possible applications of AFM are :

  • Substrate roughness analysis.
  • Step formation in thin film epitaxial deposition.
  • Pinholes formation or other defects in oxides growth.
  • Grain size analysis.
  • Phase mode is very sensitive to variations in material properties, including surface stiffness, elasticity and adhesion.
  • Comparing the tip-samples forces curves for materials to study the ratio of Young´s Modulus (graphite as a reference for measure of the indentation).
  • Obtaining information of what is happening under indentation at very small loads .
  • By In situ AFM analysis with changes in temperature we can study changes in the structure.


References :

1.  Basic Theory Atomic Force Microscopy (AFM) by  Robert A. Wilson and Heather A. Bullen,* Department of Chemistry, Northern Kentucky University, Highland Heights
2.  Principles of atomic force microscopy (AFM) written by Arantxa Vilalta-Clemente , Aristotle University, Thessaloniki, Greece and Kathrin Gloystein, Aristotle University, Thessaloniki, Greece





Friday, 3 May 2013

WHAT IS ANALYTICAL INSTRUMENT ?

An Analytical Instrument can be any type of equipment, apparatus or device as is specifically designed, constructed and often, through trial and error, ingeniously refined to apply utmost efficiency in the utilization of well proven physical principle, relationship or technology to facilitate or enable the pursuit, acquisition, transduction and storage of repeatable, verifiable data, usually consisting of sets numerical measurements made upon otherwise unknown, unproven quantities, properties, phenomena, materials, forces or etc., preferably as those characterized over time by an increasing degree of accuracy and precision and, typically, those initially derived as isolated or dependent variable results from, or empirical observations made during, the course of such experimental procedures as are firmly based upon the scientific method and long accepted tenants of experimental design.




Scientific instruments are part of laboratory equipment, but are considered more sophisticated and more specialized than other measuring instruments as scales, meter sticks, chronometers,thermometers or even power or waveform generators. They are increasingly based upon the integration of computers to improve and simplify control, enhance and extend instrumental functions, conditions, parameter adjustments and data sampling, collection, resolution, analysis (both during and post-process), storage and retrieval. Individual instruments can also be connected as a local area network (LAN) and can be further integrated as part of a laboratory information management system (LIMS), that in addition to having Internet access to databases of such physical properties as compound spectra libraries through the World Wide Web for results comparisons and advanced data analysis as well as the obvious usefulness of now ubiquitous email for rapid exchange of informational text and images, consultation and peer review. Recently, the development has utilized open source principles borrowed from the software industry to rapidly improve low-cost open-source hardware for scientific measurements


Source: Wikipedia